Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQGDLPNGIQKQDIFKTLALI--GDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
1DBU Chain:A ((38-155))
-------------------------------------GIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGVKKVEMADKDAAQKSTGYLVGGISPLG--QKKRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGAEFTDIVD
General information:
TITO was launched using:
RESULT:
Template:
1DBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65322 for 892 contacts (-73.2/contact) +
2D Compatibility (PS) -13019 + (NN) -4852 + (LL) 2760
1D Compatibility (HY) -5600 + (ID) 2250
Total energy: -88283.0 ( -98.97 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1DBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBU-query.scw
PDB file :
Tito_Scwrl_1DBU.pdb
: