Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNHKTKKLTVLAIMIALDVFLTPIFRIEGMAFMSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAPLAI-LGAGPGAFLAGWLYQFYAKDWMSWVGEFIGTGIIGALLSAPIMVWFWTWTADGNHEVLAKASAAQSIFLFMPRFIGATIIGGVIALLLLQGLKRVPVFMTIQALFKGEKVK
3W9J Chain:A ((957-1019))
------------------------------------------GIVEAAIEACRMRLRP--IVMTSLAFILGVVPLAISTGAGSGSQHA------------------IGTGVIGGMVTATVLAIFWVPLFYVAVSTL-----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3W9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41418 for 313 contacts (-132.3/contact) +
2D Compatibility (PS) -6121 + (NN) 2749 + (LL) 10996
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -40294.0 ( -128.73 by residue)
QMean score : -0.017
(partial model without unconserved sides chains):
PDB file :
Tito_3W9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W9J-query.scw
PDB file :
Tito_Scwrl_3W9J.pdb
: