Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCAFFKTDTLKSCAIDQNAGSKKSATLQIARRVKKGIGDFPKTEKGNSLIVGYPQIGLS-P-FLFSHVSGHVLRLPENKSTELWEDCQILNKGHCVEMRK
1FM2 Chain:B ((178-202))
----------------------------------------GKTANGNALLLQNPHLSWTTDYFTY-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -401 for 60 contacts (-6.7/contact) +
2D Compatibility (PS) -2555 + (NN) -1316 + (LL) 4932
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -1690.0 ( -28.17 by residue)
QMean score : 0.120
(partial model without unconserved sides chains):
PDB file :
Tito_1FM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FM2-query.scw
PDB file :
Tito_Scwrl_1FM2.pdb
: