Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLYVQLMVILTFSFAGEVLSTIFNLPVPGSIIGLILLFLALKYKIIRLRHIDAVGNFLLANMTILFLPPAVGLMEHFQDIKPYLFGIAIIILGALFLN-ILTIGLVSQ----WIKKRYEGDYPEIGGKNGNFNE
4GX1 Chain:A ((73-113))
-----------------------------------------------------------------------------FESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHI
General information:
TITO was launched using:
RESULT:
Template:
4GX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13903 for 136 contacts (-102.2/contact) +
2D Compatibility (PS) -3671 + (NN) -886 + (LL) 7476
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -16534.0 ( -121.57 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_4GX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GX1-query.scw
PDB file :
Tito_Scwrl_4GX1.pdb
: