Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEIDYKKVTGMIHSTESFGSVDGPGIRFIIFMQGCKMRCQYCHNPDTWEMETNNSKERTVEDVLKEALRYKHFW-GKDGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFAYRATPEYHAILEKLLDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARYLSDRGTPVWIRHVLVPGLTDIDDHLKRLGEFVQTLDNVDKFEVLPYHTMGEFKWRELGIPYPLAGVKPPTPERVKNAKDIMKTESYTEYLKRIQN
3CB8 Chain:A ((2-237))
--------VIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD--THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDP----VIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMF-----
General information:
TITO was launched using:
RESULT:
Template:
3CB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122009 for 1948 contacts (-62.6/contact) +
2D Compatibility (PS) -25324 + (NN) -14912 + (LL) 1772
1D Compatibility (HY) -22800 + (ID) 6300
Total energy: -189573.0 ( -97.32 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_3CB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CB8-query.scw
PDB file :
Tito_Scwrl_3CB8.pdb
: