Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSRQNSKLIQAFIAIILFFSLGLVIKYWPDTVIAFDQNIQESVRGQLPNLSTRFFKLITVIGNTVSQIAIAIMSVTFCYLKKWYPQARFIAVNAIISGICILSLKLIFQRVRPTLTH--------LVFAGGYSFPSGHSMGTFMIFGSIIILLQYYMPKSIWKLLCQGILGLLIFLIGLSRIYLGVHFPTDVLAGFILAYGILNLTAYIFLAKDWLKKVK |
1D2T Chain:A ((108-214)) | --------------------------------------------------------------------------------------------------DLATRSAKDHYMRIRPFAFYGVSTCNTQDKLSKNGSYPSGHTSIGWATALVLAEINPQRQ------N----EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHTNPAFQQQLQKAK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1D2T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -94784 for 703 contacts (-134.8/contact) +
2D Compatibility (PS) -9604 + (NN) 2769 + (LL) 9968
1D Compatibility (HY) 5600 + (ID) 900
Total energy: -86951.0 ( -123.69 by residue)
QMean score : 0.205
|
|
|