Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKISEEEVRHVANLSKLRFSDQETKEFASSLSKIVDMIELLNEVDTEGVPVTTTMADRKTVMREDIAQPGNNRDDLFKNVPQHQDYYIKVPAILEDGGDA
2DQN Chain:C ((3-95))
-KVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA-
General information:
TITO was launched using:
RESULT:
Template:
2DQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7869 for 382 contacts (-20.6/contact) +
2D Compatibility (PS) -9639 + (NN) -3760 + (LL) 312
1D Compatibility (HY) -4000 + (ID) 1850
Total energy: -26806.0 ( -70.17 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_2DQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DQN-query.scw
PDB file :
Tito_Scwrl_2DQN.pdb
: