Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVL-GSFSTISALDDGQKSSRKAAYIN---GFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLP-KQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
| 1LDF Chain:A ((10-254)) | --------QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQ--WEISVI-FGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL--AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVP-----------------------RGPL--APLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIP--YFLVPLFGPIVGAIVGAFAYRKLIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144823 for 2118 contacts (-68.4/contact) +
2D Compatibility (PS) -24802 + (NN) -6103 + (LL) 3268
1D Compatibility (HY) -24800 + (ID) 4250
Total energy: -201510.0 ( -95.14 by residue)
QMean score : 0.269
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