Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSRKKDKLVLRLTTTLLVFGLGGVWFYNYKNDNVEPTVTSASDQTTTFIQTISPTAIEISKTYDLYASVLLAQAILESSSGQSDLSK---APNYNLFGIKG--EYKGKSVQMPTLEDDGKGNMTQIQAPFRAYPNYSASLYDYAELV-SSQKYASVWKSNTSSYKDATAALTGLYATDTAYASKLNQIIETYSLDAYDK
3VWO Chain:A ((3-148))
-----------------------------------------------AFVDATWPQAAKAAQSLGVPAHFLVAQAALETGWGKSQIRNKDGTPSYNLFNIKAGSNWTGKVVEARTVEYENGQRKVRVER-FRAYDSYEQAFQDYADLVGNSPRYAKV-AGKTDGHAFARALQEGGYATDPSYADKLARVINGNALRQRLM
General information:
TITO was launched using:
RESULT:
Template:
3VWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43212 for 1052 contacts (-41.1/contact) +
2D Compatibility (PS) -14837 + (NN) -988 + (LL) 2888
1D Compatibility (HY) -8000 + (ID) 2600
Total energy: -66749.0 ( -63.45 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3VWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VWO-query.scw
PDB file :
Tito_Scwrl_3VWO.pdb
: