Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKILAACGAGVNSSHQIKDAIETQLGDRGYNVHCDAVMVKDITEEMVNKYDIFTPIAKTDLGFNVPIPVVEAGPILYRIPVMSEPVFTALEQVIKEHNLS
3SKU Chain:A ((119-184))
-----------------------------SYNKSLGACPIR--TQPRWNYYDSFSAVSEDNLGFLMHAPAFETAGTYLRLVKIND--WTEITQFILEHRAK
General information:
TITO was launched using:
RESULT:
Template:
3SKU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12467 for 279 contacts (-44.7/contact) +
2D Compatibility (PS) -6901 + (NN) -338 + (LL) 2244
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -23212.0 ( -83.20 by residue)
QMean score : 0.014
(partial model without unconserved sides chains):
PDB file :
Tito_3SKU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SKU-query.scw
PDB file :
Tito_Scwrl_3SKU.pdb
: