Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQQYFVNGEAGAYVTIEDKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAH--RFQILEELDNNVEMPVQVTIASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELAGFDKIFIAYEESAKEGELSALAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEVGAIKVGLGPRIMRTETAPLYALSVISYSAELL |
| 1VHY Chain:A ((21-236)) | -----------------SEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQVI----RMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYS-------IKTLPTIPAGGVRLLI-GSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICFGDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 64387 for 1484 contacts (43.4/contact) +
2D Compatibility (PS) -20919 + (NN) 7933 + (LL) 1788
1D Compatibility (HY) 10800 + (ID) 800
Total energy: 63189.0 ( 42.58 by residue)
QMean score : 0.027
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