Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKRIWYLIIIITVILGGLAMKNLFATTEASSRKQEQDRVVKYIKQHVELTNGDQIKKVEFIDFQKNEMTGTW---GISTKINEQFSIS---FSEDRIGGKLRALGYQPNEIGFSKDINSNNQNVNDIEVIYMKEE |
1R4X Chain:A ((153-229)) | -----------------------------------------EYVLEDLEVTVADHIQKVMKLNFE-----AAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCE---RSDKVPDNKNTHTLLLAGVFRG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R4X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 19689 for 304 contacts (64.8/contact) +
2D Compatibility (PS) -7303 + (NN) -15 + (LL) 4848
1D Compatibility (HY) 2000 + (ID) 300
Total energy: 18919.0 ( 62.23 by residue)
QMean score : 0.061
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