Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITKEQYFYFRQLDDFKHFTIEQFDHIVSHIKHRTALKNHTLFFEGDYREKLFLIQSGHVKIEQSDASGSFIYTDYVRQGTVFPYGGLFLDD--DYHFSAVAITDIEYFSLPMALYEEYSLQNINQMKHLCRKYSKLLRVHEIRLRNMVTSSASMRVIQSLATLL--LQVPTERG-HLPFPITTIEIANMSGTTRETVSHVLKELRQKDIVEMKGKKLLYNNKNYFKKFIE
3LA3 Chain:A ((50-230))
-------------------------------------RNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSRQF-
General information:
TITO was launched using:
RESULT:
Template:
3LA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75607 for 1231 contacts (-61.4/contact) +
2D Compatibility (PS) -19418 + (NN) -8590 + (LL) 3768
1D Compatibility (HY) -13600 + (ID) 2400
Total energy: -115847.0 ( -94.11 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_3LA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LA3-query.scw
PDB file :
Tito_Scwrl_3LA3.pdb
: