Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK
1TQJ Chain:A ((5-221))-IVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERG-LDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSK


General information:
TITO was launched using:
RESULT:

Template: 1TQJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1196 -178003 -148.83 -843.61
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.88

3D Compatibility (PKB) : -148.83
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.88
QMean score : 0.644

(partial model without unconserved sides chains):
PDB file : Tito_1TQJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1TQJ-query.scw
PDB file : Tito_Scwrl_1TQJ.pdb: