Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLW-QIVNENNANRYTNYQSRTSRPIPVVVLTRR
3R5L Chain:A ((16-120))
--------------------------------------PVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTAR--DATDEERAEYWPQLVTMYPS--YQDYQSWTDRTIPIVVC---
General information:
TITO was launched using:
RESULT:
Template:
3R5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46879 for 748 contacts (-62.7/contact) +
2D Compatibility (PS) -11614 + (NN) -9016 + (LL) 2580
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -76479.0 ( -102.24 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_3R5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5L-query.scw
PDB file :
Tito_Scwrl_3R5L.pdb
: