Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSTLQGLAEYREEIRKSRFHTIAAPVADEDEAQAFI----AAHRDASAGHNCWAWKCGA-----QYRFSDDGEPGGSAGRPILAAIEGQDMDCVAVLVSRWFGGIKLGTGGLARAYGGGAAKCLQQAPRSELVERCRVRFACAFADHALLKARSLALGASVAAEDYGADGVVLTLELPVARFEALQALLVDLSRGQVRPQRLDA
1VI7 Chain:A ((18-201))
------------EEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDAR--HHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQA-FVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE
General information:
TITO was launched using:
RESULT:
Template:
1VI7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84208 for 1277 contacts (-65.9/contact) +
2D Compatibility (PS) -19311 + (NN) -9189 + (LL) 728
1D Compatibility (HY) -11600 + (ID) 3550
Total energy: -127130.0 ( -99.55 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1VI7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI7-query.scw
PDB file :
Tito_Scwrl_1VI7.pdb
: