Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLHIPGTQSTPAIQGDWQAGRLSMQGDSYPENSYELFGQVIDWVERFLADGQRPLELDLRLLYLNTSSIKAMMDILDLLEEAHQGGRPVSLRWHYDRRNERVAELAEEFREDCSFPFAIQAHDE
3LN4 Chain:A ((143-180))
--------------TQRKWEAARVAEQDRAY------LEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVV
General information:
TITO was launched using:
RESULT:
Template:
3LN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4133 for 161 contacts (-25.7/contact) +
2D Compatibility (PS) -4135 + (NN) -160 + (LL) 468
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -11860.0 ( -73.66 by residue)
QMean score : -0.084
(partial model without unconserved sides chains):
PDB file :
Tito_3LN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LN4-query.scw
PDB file :
Tito_Scwrl_3LN4.pdb
: