Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPHLIYYVATSLDGFIARPDGSVDWLDRFAEGGN-DHGYNGFYQGIDGLLMGRGTYDIVRGFG-DWPYPGKPCQVLTRNPRESA---VEGVELRHDTPQEGLARLGEQGCRRVWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAGIPLFAGGRERRLQLLEQHGYNSGIVQMRYQVIAEDDPQ
3KY8 Chain:A ((23-166))
-----IVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLSFDCDWPY-SKPVFVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAKGFNELYIDGGVTIQ-NFLKEDLIDEMVITRFPILLGGGVPLF----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95825 for 939 contacts (-102.1/contact) +
2D Compatibility (PS) -14896 + (NN) -3737 + (LL) 2308
1D Compatibility (HY) -18800 + (ID) 2700
Total energy: -133650.0 ( -142.33 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_3KY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KY8-query.scw
PDB file :
Tito_Scwrl_3KY8.pdb
: