Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
1BM2 Chain:A ((9-106))
------------------------------------------------------MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIE-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61525 for 660 contacts (-93.2/contact) +
2D Compatibility (PS) -10590 + (NN) -6691 + (LL) 5912
1D Compatibility (HY) -13600 + (ID) 4900
Total energy: -91394.0 ( -138.48 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_1BM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BM2-query.scw
PDB file :
Tito_Scwrl_1BM2.pdb
: