Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
1POB Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNDNDYNINLKARC-
General information:
TITO was launched using:
RESULT:
Template:
1POB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72381 for 868 contacts (-83.4/contact) +
2D Compatibility (PS) -12573 + (NN) -6063 + (LL) 120
1D Compatibility (HY) -17600 + (ID) 5650
Total energy: -114147.0 ( -131.51 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1POB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1POB-query.scw
PDB file :
Tito_Scwrl_1POB.pdb
: