Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFQYFQRMTTVSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPKGAHFLAKSLDDALELIEDPELTNKVDVVWIVGGSSVYKEAMNKPGHVRLFVTRIMQEFESDAFFPEIDFEKYKLLPEYPGVPLDVQEEKGIKYKFEVYEKNN
3D80 Chain:A ((1-186))
-VRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEKGIKYKFEVYEKKD
General information:
TITO was launched using:
RESULT:
Template:
3D80.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121843 for 1391 contacts (-87.6/contact) +
2D Compatibility (PS) -19977 + (NN) -8385 + (LL) 208
1D Compatibility (HY) -26000 + (ID) 8350
Total energy: -184347.0 ( -132.53 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_3D80.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D80-query.scw
PDB file :
Tito_Scwrl_3D80.pdb
: