Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1JJT Chain:A ((3-222))
--------------------SLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKK------
General information:
TITO was launched using:
RESULT:
Template:
1JJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90352 for 1906 contacts (-47.4/contact) +
2D Compatibility (PS) -24271 + (NN) -14738 + (LL) 1960
1D Compatibility (HY) -31200 + (ID) 11000
Total energy: -169601.0 ( -88.98 by residue)
QMean score : 0.729
(partial model without unconserved sides chains):
PDB file :
Tito_1JJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJT-query.scw
PDB file :
Tito_Scwrl_1JJT.pdb
: