Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
1JYS Chain:A ((11-240))
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQ----SFDEFLAVAAKQSSLMVESLVQKLA--
General information:
TITO was launched using:
RESULT:
Template:
1JYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188719 for 1972 contacts (-95.7/contact) +
2D Compatibility (PS) -24824 + (NN) -18546 + (LL) 184
1D Compatibility (HY) -32800 + (ID) 11300
Total energy: -276005.0 ( -139.96 by residue)
QMean score : 0.726
(partial model without unconserved sides chains):
PDB file :
Tito_1JYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYS-query.scw
PDB file :
Tito_Scwrl_1JYS.pdb
: