Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
1MMQ Chain:A ((1-166))
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGK-------
General information:
TITO was launched using:
RESULT:
Template:
1MMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70326 for 1297 contacts (-54.2/contact) +
2D Compatibility (PS) -18378 + (NN) -16267 + (LL) 192
1D Compatibility (HY) -21200 + (ID) 8300
Total energy: -134279.0 ( -103.53 by residue)
QMean score : 0.836
(partial model without unconserved sides chains):
PDB file :
Tito_1MMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MMQ-query.scw
PDB file :
Tito_Scwrl_1MMQ.pdb
: