Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLAAVSLGLLLLALLLLLRHLGWGLVTIFWFEYVLQPVHNLIMGDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPSSPDKS
2ZVJ Chain:A ((5-216))
---------------------------------------------DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQG-------
General information:
TITO was launched using:
RESULT:
Template:
2ZVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146645 for 1828 contacts (-80.2/contact) +
2D Compatibility (PS) -23138 + (NN) -9234 + (LL) 4344
1D Compatibility (HY) -32800 + (ID) 10600
Total energy: -218073.0 ( -119.30 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_2ZVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZVJ-query.scw
PDB file :
Tito_Scwrl_2ZVJ.pdb
: