Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
4DUM Chain:A ((50-240))
--------------------------EVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKS----KNRFVV
General information:
TITO was launched using:
RESULT:
Template:
4DUM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77877 for 1376 contacts (-56.6/contact) +
2D Compatibility (PS) -19889 + (NN) -10296 + (LL) 732
1D Compatibility (HY) -26800 + (ID) 9350
Total energy: -143480.0 ( -104.27 by residue)
QMean score : 0.758
(partial model without unconserved sides chains):
PDB file :
Tito_4DUM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUM-query.scw
PDB file :
Tito_Scwrl_4DUM.pdb
: