Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
3UDD Chain:A ((9-212))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGR-------YAEYVIYRGEQAYPEYLITYQIMKPEA--
General information:
TITO was launched using:
RESULT:
Template:
3UDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66125 for 1527 contacts (-43.3/contact) +
2D Compatibility (PS) -21452 + (NN) -8164 + (LL) -76
1D Compatibility (HY) -26000 + (ID) 9800
Total energy: -131617.0 ( -86.19 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3UDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDD-query.scw
PDB file :
Tito_Scwrl_3UDD.pdb
: