Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSPLNQSAEGLPQEASNRSLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIGSLATTDLLVSILVMPISIAYTITHTWNFGQILCDIWLSSDITCCTASILHLCVIALDRYWAITDALEYSKRRTAGHAATMIAIVWAISICISIPP--LFWRQAKAQE------EMSDCLVNTSQISYTIYSTCGAFYIPSVLLIILYGRIYRAARNRILNPPSLYGKRFTTAHLITGSAGSSLCSLNSSLHEGHSHSAGSPLFFNHVKIKLADSALERKRISAARERKATKILGIILGAFIICWLPFFVVSLVLPICRDSCWIHPALFDFFTWLGYLNSLINPIIYTVFNEEFRQAFQKIVPFRKAS |
| 3SN6 Chain:R ((183-490)) | --------------------------------------VGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYR---QEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEG-R------------------------------------------------------CLKEHKALKTLGIIMGTFTLCWLPFFIVNIV-HVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLC----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -241239 for 2001 contacts (-120.6/contact) +
2D Compatibility (PS) -27575 + (NN) 1525 + (LL) 6420
1D Compatibility (HY) -36400 + (ID) 5500
Total energy: -302769.0 ( -151.31 by residue)
QMean score : 0.340
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