Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDVVDSLLVNGSNITPPCELGLENETLFCLDQPRPSKEWQPAVQILLYSLIFLLSVLG---NTLVITVLIRNKRMRTVTNIFLLSLAVSDLMLCLFCMPFNLIPNLLKDFIFGSAVCKTTTYFMGTSVSVSTFNLVAISLERYGAICKPLQSRVWQTKSHALKVIAATWCLSFTIMTPYPI--YSNLVPFTKNNNQTANMCRFLLPN-DVMQQSWHTFLLLILFLIPGIVMMVAYGLISLELYQGIKFEASQKKSAKERKPSTTSSGKYEDSDGCYLQKTRPPRKLELRQLSTGSSSRANRIRSNSSAANLMAKKRVIRMLIVIVVLFFLCWMPIFSANAWRAYDTASAERRLSGTPISFIL--LLSYTSSCVNPIIYCFMNKRFRLGFMATFPCCPNPGPPGARGEVGEEEEGGTTGASLSRFSYSHMSASVPPQ |
| 3CAP Chain:A ((32-326)) | -----------------------------------AEPWQFS---MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAFTWVMALACAAP-PLVGWSRYIP---EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV----------KEAAAQQQESATT------------QK---------------------------------AEKEVTRMVIIMVIAFLICWLP-YAGVAFYIFTHQGSDFG----PIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN-------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -215824 for 2183 contacts (-98.9/contact) +
2D Compatibility (PS) -29561 + (NN) -8249 + (LL) 5508
1D Compatibility (HY) -35200 + (ID) 4550
Total energy: -287876.0 ( -131.87 by residue)
QMean score : 0.196
|
|
|