Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDPLNLSWYDDDLERQNWSRPFNGSDGKADRPHYNYYATLLTLLIAVIVFG----NVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVTVMISIVWVLSFTISCPLLF---GLNNADQNECIIANP--AFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRAHLRAPLKGNC-THPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHG---LHSTPDSPAKPEKNGHAKDHPKIAKIFEIQTMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILHC |
| 4IAR Chain:A ((19-396)) | ------------------------------------WKVLLVMLLALITLATTLSNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWTLGQVVCDFWLSSDITCCTASIWHLCVIALDRYWAITDAVEYSAKRTPKR-AAVMIALVWVFSISISLPPFFWRQA------SECVVNTDHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRI-----------------ADLEDNWETLNDNLK---VIEKADNAAQVKDALTK--MRAAALDAQ---KATPPKLEDKSPDSPEMKDF------RHGFDILVGQIDDALKLANEGKVKEAQAAAE--QLKTTRNAYIQKYLAA---------RERKATKTLGIILGAFIVCWLPFFIISLVMPI---WFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKLIRF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4IAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -200641 for 2649 contacts (-75.7/contact) +
2D Compatibility (PS) -36312 + (NN) -7921 + (LL) 4264
1D Compatibility (HY) -34400 + (ID) 6800
Total energy: -281810.0 ( -106.38 by residue)
QMean score : 0.216
|
|
|