Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANASEPGGSGGGEAAALGLKLATLSLLLCV--SLAGNVLFALLIVRERSLHRAPYYLLLDLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDDEDAP----CALEQRPDGAPGALGFLLLLAVVVGATHLVYLRLLFF--IHDRRKMRPARLVPAVSHDW-TFHGPGATGQAAANWT-----------AGFGRGPTPPALVGIRPAGP--------------------------------------GRGARRLLVLEEFKTEKRLCKMFYAVTLLFLLLWGPYVVASYLRVLVRP--GAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPRTTQATHPCDLKGIGL |
| 4NC3 Chain:A ((23-416)) | -------------EEQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMW---PLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAI-KKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGIET-VDNPNNITCVLTKERFG-----DFMLFGSLAAFFTPLAIMIVTYFLTIHALQK-KAADL----EDNWETLNDNLKVIEKADNAAQVKDALTKMRA--------------------KDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLQTISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAF-GRYITCNYR---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -253672 for 2169 contacts (-117.0/contact) +
2D Compatibility (PS) -33108 + (NN) -24265 + (LL) 1004
1D Compatibility (HY) -28000 + (ID) 4450
Total energy: -342491.0 ( -157.90 by residue)
QMean score : 0.291
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