Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHTVATSGPNASWGAPANASGCPGCGANASDGPVPSPRAVDAWLVPLFFAALMLLGLVGNSLVIYVICRHKPMRTVTNFYIANLAATDVTFLLCCVPFTALLYPLPGWVLGDFMCKFVNYIQQVSVQATCATLTAMSVDRWYVTVFPLRALHRRTPRLALAVSLSIWVGSAAVSAPV--LALHRLSPGPRAYCSEAF--PSRALERAFALYNLLALYLLPLLATCACYAAMLRHLGRVAVRPAPADSALQGQVLAERAGAVRAKVSRLVAAVVLLFAACWGPIQLFLVLQALGPAGSWHPRSYAAYALKTWAHCMS--YSNSALNPLLYAFLGSHFRQAFRRVCPCAPRRPRRPRRPGPSDPAAPHAELLRLGSHPAPARAQKPGSSGLAARGLCVLGEDNAPL |
| 5C1M Chain:A ((11-296)) | -----------------------------------SPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSID-CTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRM--------LSGS--KEKDRNLR-RITRMVLVVVAVFIVCWTPIHIYVIIKALITI----PET--TFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF---------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -210403 for 2058 contacts (-102.2/contact) +
2D Compatibility (PS) -29622 + (NN) -21622 + (LL) 2784
1D Compatibility (HY) -34800 + (ID) 4900
Total energy: -298563.0 ( -145.07 by residue)
QMean score : 0.322
|
|
|