Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNSSFHLHFLDLNLNATEGNLSGPNVKNKSSPCEDMGIAVEVFLTLGVISLLENILVIGAIVKNKNLHSPMYFFVCSLAVADMLVSMSSAWETITIYLLNNKHLVIADAFVRHIDNVFDS----------MICISVVASMCSLLAIAVDRYVTIFYALRYHHIMTARRSGAIIAGIW------------------------AFCTGC--GIVFILYSESTYVILCLISMFFA----MLFLLVSLYIHMFLLARTHVKRIAALPGASSARQRTSMQ----GAVTVTMLLGVFTVCWAPFFLHLTLMLSCPQNLYCSRFMSHFNMYLILIM--CNSVMDPLIYAFRSQEMRKTFKEIICCRGFRIACSFPRRD |
| 2YDV Chain:A ((3-303)) | --------------------------------IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVG------------------VLAIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ---------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWL----MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -292299 for 1791 contacts (-163.2/contact) +
2D Compatibility (PS) -25632 + (NN) -13060 + (LL) 2684
1D Compatibility (HY) -31600 + (ID) 4350
Total energy: -364257.0 ( -203.38 by residue)
QMean score : 0.398
|
|
|