Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVQGSQRRLLGSLNSTPTAIPQLGLAANQTGARCLEVSISDGLFLSLGLVSLV---ENALVVATIAKNRNLHSPMYCFICCLALSDLLVSGSNVLETAVILLLEAGA-LVARAAVLQ-----QLDNVIDVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFIA--------------YYDH----------VAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPVHQGFGLKGAVTLTILLGIFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIICNAIIDPLIYAFHSQELRRTLKEVLTCSW |
| 2YCW Chain:A ((3-297)) | --------------------------------AELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVG---------LLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLC---VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVA-LRVYREAKEQIRKIDRASKRKR-VMLMREHKALKTLGIIMGVFTLCWLPFFL-VNIVNVFNRDLVPDWLFVAFNW---LGYANSAMNPIIYC-RSPDFRKAFKRLLAF-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -273349 for 1903 contacts (-143.6/contact) +
2D Compatibility (PS) -27046 + (NN) -11992 + (LL) 3088
1D Compatibility (HY) -30000 + (ID) 4350
Total energy: -343649.0 ( -180.58 by residue)
QMean score : 0.237
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