Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPQILIFTYLNMFYFFPPLQILAENLTMVTEFLLLGFSSLGEIQLALF------VVFLFLYLVILSGN-VTIISVIHLDKSLHTPMYFFLGILSTSETFYTFVILPKMLINLLSVARTISFNCCALQMFFFLGFAITNCLLLGV--MGYDRYAAICHPLHYPTLMSWQVCGKLAAACAIGGFLASLTVVNLVFSLPFCSANKVNHYFCDISAVILLACT---NTDVNEFVIFICGVLVLVVPFLFICV------SYLCILRTILKIPS-AEG-RRKAFSTCASHLSVVIVHYGCASFIYLRPTANYVSNK-DRLVTVTYTIVTPLLNPMVYSLRNKDVQLAIRKVLGKKGSLKLYN |
| 4GRV Chain:A ((20-320)) | -------------------------------------NSDLDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARK--SLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKK---------FISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGH-----LLTKSPSLNAAKSELDK---RNTNGV--ITKDEAEKLFNQDVDAAVRGIL-RNAKLKPVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GRV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -191259 for 1690 contacts (-113.2/contact) +
2D Compatibility (PS) -26511 + (NN) 3623 + (LL) 4716
1D Compatibility (HY) -15200 + (ID) 3500
Total energy: -228131.0 ( -134.99 by residue)
QMean score : 0.139
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