Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEPQNTSTVTNFQLLGFQNLLEWQALLFVIFLLIYCLTIIGNVVIITVVSQGLRLHSPMYMFLQHLSFLEVWYTSTTVP----LLLANLLSWGQAISFSACMAQLYFFVFLGATECFLLAFMAYDRYLAICSPLRYPFLMHRGLCARLVVVSWCTGVSTGFLPSLMISRLDFCGRNQINHFFCDLPPLMQLSC-----------SRVYITEVTIFILSIAVLCICFFLTLGPYVFIVSSILRIPSTSGRRKTFSTCGSHLAVVTLYYGTMISMY-VCPSPHLLPEINKIISVFYTVVTP---------------LLNPVIYSLRNKDFKEAVRKVMRRKCGILWSTSKRKFLY |
2YCW Chain:A ((9-297)) | ---------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL----CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMM-------------HWWRDEDP-QALKCYQDPGCCDFVTNRAYAIASSIISFYIPLL-IMIFVALRVYREAKEQIRKIDRAS-KRKRVMLMREHKALKTL--GIIMGVFTLCWLPFFL--VN-IVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224194 for 1818 contacts (-123.3/contact) +
2D Compatibility (PS) -25870 + (NN) -3635 + (LL) 3772
1D Compatibility (HY) -25200 + (ID) 3950
Total energy: -279077.0 ( -153.51 by residue)
QMean score : 0.215
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