Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGPRNQTAVSEFLLMKVTEDPELKLIPFSLFLSMYLVTIL-GNLLILLAVISDSHLHTPMYFLLFNLSFTDICLTTTTVPKILVNIQAQNQSITYTGC--LTQICLVLVFAGLESCFLAVMAYDRYVAICHPLRYTVLMNVHFWGLLILLSMFMSTMDALVQSLMVLQLSFCKNVEIPLFFCEVVQVIKLACSDTLINNILIYFASSVFGAIPLSGIIFSYSQIVTSVLRMPS--ARGKYKAFSTCGCHLSVFSLFYGTAFGVYISSAVAESSRITAVASVMYTV--VPQMMNPFIYSLRNKEMKKALRKLIGRLFPF |
| 4LDE Chain:A ((178-461)) | --------------------DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET--LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL----TSFLPIQMHWYRATHQEAINCYAEET----CCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -225436 for 2004 contacts (-112.5/contact) +
2D Compatibility (PS) -27367 + (NN) 404 + (LL) 3152
1D Compatibility (HY) -26400 + (ID) 3350
Total energy: -278997.0 ( -139.22 by residue)
QMean score : 0.304
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