Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLMASTTSAVPGHPSLPSLPSNSSQERPLDTRDPLLARAELALLSIVFVAVALSNGLVLAALARRGRRGHWAPIHVFIGHLCLAD-LAVALFQVLPQLAWKATDRFRGP----DALCRAVKYLQMVGMYASSYMILAMTLDRHRAICRPMLAYRHGSGAHWNRPVLVAWAFSLLLSLPQLFIFAQRNVEGGSGVTDCWACFAEP---WGRRTYVTWIALMVFVAPTLGIAACQ-VLIFREIHASLVPGPSERPGGRRRGRRTGSPGEGAHVSAAVAKTVRMTLVIVVVYVLCWAPFFLVQLWAAW--DPEAPLEGAPFVLLMLLASLNSCTNPWIYASFSSSVSSELRSLLCCARGRTPPSLGPQDESCTTASSSLAKDTSS |
| 5C1M Chain:A ((21-286)) | ----------------------------------------MALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIF--NLALADALATS------TLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGS---IDCTLTFSHPTWYWENLLKIC-VFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRR-------------------ITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201646 for 1847 contacts (-109.2/contact) +
2D Compatibility (PS) -27457 + (NN) -17312 + (LL) 4180
1D Compatibility (HY) -27200 + (ID) 3700
Total energy: -273135.0 ( -147.88 by residue)
QMean score : 0.245
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