Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AVTCGDVTSAIAPCMSYATGK-ASAPSAGCCSGVRTLNGKASTSADRQAACRCLKNLAGSFKGISMGNAATIPGKCGVSVSFPINTNVNCNNIH
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQ--------HADFACLCGYKNSPWLGSFGVDPELASALPKQCGL------ANAPTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32225 for 519 contacts (-62.1/contact) +
2D Compatibility (PS) -7908 + (NN) -770 + (LL) 628
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -42675.0 ( -82.23 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: