Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--VSCGDAVSALAPCGPFLLG-GAARPGDRCCGGARALRGMAGTAEARRALCRCLE-QSGPSFGVLPDRARRLPALCKLGLAIPVGAATDCSKIS
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD--------FACLCGYKNSPWLGSFGVDPELASALPKQCG------LANAPTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34941 for 502 contacts (-69.6/contact) +
2D Compatibility (PS) -7691 + (NN) -2420 + (LL) 1052
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -47850.0 ( -95.32 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: