Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-ALSCGSVNSNLAACIGYVLQGGVIPP--ACCSGVKNLNSIAKTTPDRQQACNC-IQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD----------FACLCGYKNSPWLGSFGVDPELASALPKQCGLANA------PTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37836 for 494 contacts (-76.6/contact) +
2D Compatibility (PS) -7730 + (NN) -2186 + (LL) 1256
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -49396.0 ( -99.99 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: