Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSPPPPQC--DPGLLSPCAAPIFFG--TAPSASCCSSLK-AQQGCFCQYAKDPMYASY-INSTNARKMIAACGIPLP-NCG
2RKN Chain:A ((1-77))
---AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40669 for 434 contacts (-93.7/contact) +
2D Compatibility (PS) -6983 + (NN) -4222 + (LL) -220
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -58644.0 ( -135.12 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: