Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TVVGGWGIEEKAACIVTNLMSCLPAILKG--SQPPAYCCEMLKE-QQSCLCGYIKSPTFGHYVI-PQNAHKLLAACGILYP-KC
2RKN Chain:A ((1-77))
-------AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45022 for 454 contacts (-99.2/contact) +
2D Compatibility (PS) -7075 + (NN) -2021 + (LL) 76
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -57192.0 ( -125.97 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: