Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RVVKGSGEEVNVTCDATQLSSCVTAVSTGAP--PSTDCCGKLKE-HETCLCTYIQNPLYSSY-VTSPNARKTLAACDVAYP-TC
2RKN Chain:A ((1-77))
-------AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23910 for 460 contacts (-52.0/contact) +
2D Compatibility (PS) -7110 + (NN) -136 + (LL) 176
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -37730.0 ( -82.02 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: