Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDNNPLEHCRDVFVSFMPCMGFVEG-IFQQPSPDCCRGVTHLNNVVKFTSPGSRNRQDSGETERVCLCIEIMGNANHLPFL-PAAINNLPLRCSLTLSFPISVDMDCSQFRNTKNPDVEKLN
2RKN Chain:A ((1-77))
----AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD--------------------FACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC---------------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47307 for 512 contacts (-92.4/contact) +
2D Compatibility (PS) -7295 + (NN) -677 + (LL) 1088
1D Compatibility (HY) 1200 + (ID) 800
Total energy: -53791.0 ( -105.06 by residue)
QMean score : 0.082
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: