Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNICPRVNRIVPPCVAYGLGRAPIAPCCRALNDLRFVNTRNLRRAACRCLVGVVSRNPGLTQNPRFQNI-------------------PRDCRN--TFVRPFW----WRPRIQCGRINLTDKLIYLDAEE----
3OC8 Chain:A ((4-137))
MEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSKHGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
General information:
TITO was launched using:
RESULT:
Template:
3OC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20822 for 626 contacts (-33.3/contact) +
2D Compatibility (PS) -11320 + (NN) -3648 + (LL) 0
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -42440.0 ( -67.80 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_3OC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OC8-query.scw
PDB file :
Tito_Scwrl_3OC8.pdb
: