Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AISCGTVASKLAPCIPYVTNRG---PLGGCCGGVKSLYGLARTTPDRQSVCGCLK-SLASSYNVNLGKAAGLPGQCGVNIPYKISPSTDCSKVH
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANA------PTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39239 for 482 contacts (-81.4/contact) +
2D Compatibility (PS) -7357 + (NN) -1048 + (LL) 740
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -51154.0 ( -106.13 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: