Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AISCGQVSSALRPCISYASGNGGILP-PACCSGVKRLAGAAQSTADKQAVCKCI---KSAAAGLNAGKAAGIPSKCGVSVPYSISTSVDCSKIH
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQ--------HADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANA------PTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29216 for 490 contacts (-59.6/contact) +
2D Compatibility (PS) -7527 + (NN) -1858 + (LL) 1176
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -40275.0 ( -82.19 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: