Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--ITCGQVSSNLAPCINYVKGGGAVPP--ACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANA------PTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20226 for 500 contacts (-40.5/contact) +
2D Compatibility (PS) -7761 + (NN) -3923 + (LL) 1456
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -33504.0 ( -67.01 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: