Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AIGCGTVVSYLNSCFPYVTGTGALG---GCCKGIKDLYAAAQTTADRQSVCDCLKDLAASTTGVDLGKAAGLPSQCGLNIPYKIIPSTDCSKVQ
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQ--------HADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANA------PTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33478 for 486 contacts (-68.9/contact) +
2D Compatibility (PS) -7557 + (NN) -2692 + (LL) 1540
1D Compatibility (HY) -1600 + (ID) 1150
Total energy: -44937.0 ( -92.46 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: